Towards Real-Time Monitoring of Thermal Peaks in Systems-on-Chip (SoC).

This paper presents a method to monitor the thermal peaks that are major concerns when designing Integrated Circuits (ICs) in various advanced technologies. The method aims at detecting the thermal peak in Systems on Chip (SoC) using arrays of oscillators distributed over the area of the chip. Measured frequencies are mapped to local temperatures that are used to produce a chip thermal mapping. Then, an indication of the local temperature of a single heat source is obtained in real-time using the Gradient Direction Sensor (GDS) technique. The proposed technique does not require external sensors, and it provides a real-time monitoring of thermal peaks. This work is performed with Field-Programmable Gate Array (FPGA), which acts as a System-on-Chip, and the detected heat source is validated with a thermal camera. A maximum error of 0.3 °C is reported between thermal camera and FPGA measurements.

Reducing calibration time in motor imagery-based BCIs by data alignment and empirical mode decomposition.

One of the major reasons that limit the practical applications of a brain-computer interface (BCI) is its long calibration time. In this paper, we propose a novel approach to reducing the calibration time of motor imagery (MI)-based BCIs without sacrificing classification accuracy. The approach aims to augment the training set size of a new subject by generating artificial electroencephalogram (EEG) data from a few training trials initially available. The artificial EEG data are obtained by first performing empirical mode decomposition (EMD) and then mixing resulting intrinsic mode functions (IMFs). The original training trials are aligned to common reference point with Euclidean alignment (EA) method prior to EMD and pooled together with artificial trials as the expended training set, which is input into a linear discriminant analysis (LDA) classifier or a logistic regression (LR) classifier. The performance of the proposed algorithm is evaluated on two motor imagery (MI) data sets and compared with that of the algorithm trained with only real EEG data (Baseline) and the algorithm trained with expanded EEG data by EMD without data alignment. The experimental results showed that the proposed algorithm can significantly reduce the amount of training data needed to achieve a given performance level and thus is expected to facilitate the real-world applications of MI-based BCIs.

Novel feature extraction method for signal analysis based on independent component analysis and wavelet transform.

Feature extraction is an important part of data processing that provides a basis for more complicated tasks such as classification or clustering. Recently many approaches for signal feature extraction were created. However, plenty of proposed methods are based on convolutional neural networks. This class of models requires a high amount of computational power to train and deploy and large dataset. Our work introduces a novel feature extraction method that uses wavelet transform to provide additional information in the Independent Component Analysis mixing matrix. The goal of our work is to combine good performance with a low inference cost. We used the task of Electrocardiography (ECG) heartbeat classification to evaluate the usefulness of the proposed approach. Experiments were carried out with an MIT-BIH database with four target classes (Normal, Vestibular ectopic beats, Ventricular ectopic beats, and Fusion strikes). Several base wavelet functions with different classifiers were used in experiments. Best was selected with 5-fold cross-validation and Wilcoxon test with significance level 0.05. With the proposed method for feature extraction and multi-layer perceptron classifier, we obtained 95.81% BAC-score. Compared to other literature methods, our approach was better than most feature extraction methods except for convolutional neural networks. Further analysis indicates that our method performance is close to convolutional neural networks for classes with a limited number of learning examples. We also analyze the number of required operations at test time and argue that our method enables easy deployment in environments with limited computing power.

Deep learning-based robust automatic non-invasive measurement of blood pressure using Korotkoff sounds.

This paper proposes a method that automatically measures non-invasive blood pressure (BP) based on an auscultatory approach using Korotkoff sounds (K-sounds). There have been methods utilizing K-sounds that were more accurate in general than those using cuff pressure signals only under well-controlled environments, but most were vulnerable to the measurement conditions and to external noise because blood pressure is simply determined based on threshold values in the sound signal. The proposed method enables robust and precise BP measurements by evaluating the probability that each sound pulse is an audible K-sound based on a deep learning using a convolutional neural network (CNN). Instead of classifying sound pulses into two categories, audible K-sounds and others, the proposed CNN model outputs probability values. These values in a Korotkoff cycle are arranged in time order, and the blood pressure is determined. The proposed method was tested with a dataset acquired in practice that occasionally contains considerable noise, which can degrade the performance of the threshold-based methods. The results demonstrate that the proposed method outperforms a previously reported CNN-based classification method using K-sounds. With larger amounts of various types of data, the proposed method can potentially achieve more precise and robust results.

Biological signal processing filters via engineering allosteric transcription factors.

Signal processing is critical to a myriad of biological phenomena (natural and engineered) that involve gene regulation. Biological signal processing can be achieved by way of allosteric transcription factors. In canonical regulatory systems (e.g., the lactose repressor), an INPUT signal results in the induction of a given transcription factor and objectively switches gene expression from an OFF state to an ON state. In such biological systems, to revert the gene expression back to the OFF state requires the aggressive dilution of the input signal, which can take 1 or more d to achieve in a typical biotic system. In this study, we present a class of engineered allosteric transcription factors capable of processing two-signal INPUTS, such that a sequence of INPUTS can rapidly transition gene expression between alternating OFF and ON states. Here, we present two fundamental biological signal processing filters, BANDPASS and BANDSTOP, that are regulated by D-fucose and isopropyl-ß-D-1-thiogalactopyranoside. BANDPASS signal processing filters facilitate OFF-ON-OFF gene regulation. Whereas, BANDSTOP filters facilitate the antithetical gene regulation, ON-OFF-ON. Engineered signal processing filters can be directed to seven orthogonal promoters via adaptive modular DNA binding design. This collection of signal processing filters can be used in collaboration with our established transcriptional programming structure. Kinetic studies show that our collection of signal processing filters can switch between states of gene expression within a few minutes with minimal metabolic burden-representing a paradigm shift in general gene regulation.

Brno University of Technology Smartphone PPG Database (BUT PPG): Annotated Dataset for PPG Quality Assessment and Heart Rate Estimation.

To the best of our knowledge, there is no annotated database of PPG signals recorded by smartphone publicly available. This article introduces Brno University of Technology Smartphone PPG Database (BUT PPG) which is an original database created by the cardiology team at the Department of Biomedical Engineering, Brno University of Technology, for the purpose of evaluating photoplethysmographic (PPG) signal quality and estimation of heart rate (HR). The data comprises 48 10-second recordings of PPGs and associated electrocardiographic (ECG) signals used for determination of reference HR. The data were collected from 12 subjects (6 female, 6 male) aged between 21 and 61. PPG data were collected by smartphone Xiaomi Mi9 with sampling frequency of 30 Hz. Reference ECG signals were recorded using a mobile ECG recorder (Bittium Faros 360) with a sampling frequency of 1,000 Hz. Each PPG signal includes annotation of quality created manually by biomedical experts and reference HR. PPG signal quality is indicated binary: 1 indicates good quality for HR estimation, 0 indicates signals where HR cannot be detected reliably, and thus, these signals are unsuitable for further analysis. As the only available database containing PPG signals recorded by smartphone, BUT PPG is a unique tool for the development of smart, user-friendly, cheap, on-the-spot, self-home-monitoring of heart rate with the potential of widespread using.

Evaluation of the Accuracy of Cuffless Blood Pressure Measurement Devices: Challenges and Proposals.

Several novel cuffless wearable devices and smartphone applications claiming that they can measure blood pressure (BP) are appearing on the market. These technologies are very attractive and promising, with increasing interest among health care professionals for their potential use. Moreover, they are becoming popular among patients with hypertension and healthy people. However, at the present time, there are serious issues about BP measurement accuracy of cuffless devices and the 2021 European Society of Hypertension Guidelines on BP measurement do not recommend them for clinical use. Cuffless devices have special validation issues, which have been recently recognized. It is important to note that the 2018 Universal Standard for the validation of automated BP measurement devices developed by the American Association for the Advancement of Medical Instrumentation, the European Society of Hypertension, and the International Organization for Standardization is inappropriate for the validation of cuffless devices. Unfortunately, there is an increasing number of publications presenting data on the accuracy of novel cuffless BP measurement devices, with inadequate methodology and potentially misleading conclusions. The objective of this review is to facilitate understanding of the capabilities and limitations of emerging cuffless BP measurement devices. First, the potential and the types of these devices are described. Then, the unique challenges in evaluating the BP measurement accuracy of cuffless devices are explained. Studies from the literature and computer simulations are employed to illustrate these challenges. Finally, proposals are given on how to evaluate cuffless devices including presenting and interpreting relevant study results.

A novel algorithm based on ensemble empirical mode decomposition for non-invasive fetal ECG extraction.

Non-invasive fetal electrocardiography appears to be one of the most promising fetal monitoring techniques during pregnancy and delivery nowadays. This method is based on recording electrical potentials produced by the fetal heart from the surface of the maternal abdomen. Unfortunately, in addition to the useful fetal electrocardiographic signal, there are other interference signals in the abdominal recording that need to be filtered. The biggest challenge in designing filtration methods is the suppression of the maternal electrocardiographic signal. This study focuses on the extraction of fetal electrocardiographic signal from abdominal recordings using a combination of independent component analysis, recursive least squares, and ensemble empirical mode decomposition. The method was tested on two databases, the Fetal Electrocardiograms, Direct and Abdominal with Reference Heartbeats Annotations and the PhysioNet Challenge 2013 database. The evaluation was performed by the assessment of the accuracy of fetal QRS complexes detection and the quality of fetal heart rate determination. The effectiveness of the method was measured by means of the statistical parameters as accuracy, sensitivity, positive predictive value, and F1-score. Using the proposed method, when testing on the Fetal Electrocardiograms, Direct and Abdominal with Reference Heartbeats Annotations database, accuracy higher than 80% was achieved for 11 out of 12 recordings with an average value of accuracy 92.75% [95% confidence interval: 91.19-93.88%], sensitivity 95.09% [95% confidence interval: 93.68-96.03%], positive predictive value 96.36% [95% confidence interval: 95.05-97.17%] and F1-score 95.69% [95% confidence interval: 94.83-96.35%]. When testing on the Physionet Challenge 2013 database, accuracy higher than 80% was achieved for 17 out of 25 recordings with an average value of accuracy 78.24% [95% confidence interval: 73.44-81.85%], sensitivity 81.79% [95% confidence interval: 76.59-85.43%], positive predictive value 87.16% [95% confidence interval: 81.95-90.35%] and F1-score 84.08% [95% confidence interval: 80.75-86.64%]. Moreover, the non-invasive ST segment analysis was carried out on the records from the Fetal Electrocardiograms, Direct and Abdominal with Reference Heartbeats Annotations database and achieved high accuracy in 7 from in total of 12 records (mean values µ < 0.1 and values of ±1.96σ < 0.1).

High-speed serial deep learning through temporal optical neurons.

Deep learning is able to functionally mimic the human brain and thus, it has attracted considerable recent interest. Optics-assisted deep learning is a promising approach to improve forward-propagation speed and reduce the power consumption of electronic-assisted techniques. However, present methods are based on a parallel processing approach that is inherently ineffective in dealing with the serial data signals at the core of information and communication technologies. Here, we propose and demonstrate a sequential optical deep learning concept that is specifically designed to directly process high-speed serial data. By utilizing ultra-short optical pulses as the information carriers, the neurons are distributed at different time slots in a serial pattern, and interconnected to each other through group delay dispersion. A 4-layer serial optical neural network (SONN) was constructed and trained for classification of both analog and digital signals with simulated accuracy rates of over 79.2% with proper individuality variance rates. Furthermore, we performed a proof-of-concept experiment of a pseudo-3-layer SONN to successfully recognize the ASCII codes of English letters at a data rate of 12 gigabits per second. This concept represents a novel one-dimensional realization of artificial neural networks, enabling a direct application of optical deep learning methods to the analysis and processing of serial data signals, while offering a new overall perspective for temporal signal processing.

Is large improvement in efficiency of impulsive noise removal in color images still possible?

The substantial improvement in the efficiency of switching filters, intended for the removal of impulsive noise within color images is described. Numerous noisy pixel detection and replacement techniques are evaluated, where the filtering performance for color images and subsequent results are assessed using statistical reasoning. Denoising efficiency for the applied detection and interpolation techniques are assessed when the location of corrupted pixels are identified by noisy pixel detection algorithms and also in the scenario when they are already known. The results show that improvement in objective quality measures can be achieved by using more robust detection techniques, combined with novel methods of corrupted pixel restoration. A significant increase in the image denoising performance is achieved for both pixel detection and interpolation, surpassing current filtering methods especially via the application of a convolutional network. The interpolation techniques used in the image inpainting methods also significantly increased the efficiency of impulsive noise removal.

Smart automated heart health monitoring using photoplethysmography signal classification.

This paper proposes a smart, automated heart health-monitoring (SAHM) device using a single photoplethysmography (PPG) sensor that can monitor cardiac health. The SAHM uses an Orthogonal Matching Pursuit (OMP)-based classifier along with low-rank motion artifact removal as a pre-processing stage. Major contributions of the proposed SAHM device over existing state-of-the-art technologies include these factors: (i) the detection algorithm works with robust features extracted from a single PPG sensor; (ii) the motion compensation algorithm for the PPG signal can make the device wearable; and (iii) the real-time analysis of PPG input and sharing through the Internet. The proposed low-cost, compact and user-friendly PPG device can also be prototyped easily. The SAHM system was tested on three different datasets, and detailed performance analysis was carried out to show and prove the efficiency of the proposed algorithm.

Outdoor-Useable, Wireless/Battery-Free Patch-Type Tissue Oximeter with Radiative Cooling.

For wearable electronics/optoelectronics, thermal management should be provided for accurate signal acquisition as well as thermal comfort. However, outdoor solar energy gain has restricted the efficiency of some wearable devices like oximeters. Herein, wireless/battery-free and thermally regulated patch-type tissue oximeter (PTO) with radiative cooling structures are presented, which can measure tissue oxygenation under sunlight in reliable manner and will benefit athlete training. To maximize the radiative cooling performance, a nano/microvoids polymer (NMVP) is introduced by combining two perforated polymers to both reduce sunlight absorption and maximize thermal radiation. The optimized NMVP exhibits sub-ambient cooling of 6 °C in daytime under various conditions such as scattered/overcast clouds, high humidity, and clear weather. The NMVP-integrated PTO enables maintaining temperature within ≈1 °C on the skin under sunlight relative to indoor measurement, whereas the normally used, black encapsulated PTO shows over 40 °C owing to solar absorption. The heated PTO exhibits an inaccurate tissue oxygen saturation (StO2) value of ≈67% compared with StO2 in a normal state (i.e., ≈80%). However, the thermally protected PTO presents reliable StO2 of ≈80%. This successful demonstration provides a feasible strategy of thermal management in wearable devices for outdoor applications.

1/f-noise-free optical sensing with an integrated heterodyne interferometer.

Optical evanescent sensors can non-invasively detect unlabeled nanoscale objects in real time with unprecedented sensitivity, enabling a variety of advances in fundamental physics and biological applications. However, the intrinsic low-frequency noise therein with an approximately 1/f-shaped spectral density imposes an ultimate detection limit for monitoring many paramount processes, such as antigen-antibody reactions, cell motions and DNA hybridizations. Here, we propose and demonstrate a 1/f-noise-free optical sensor through an up-converted detection system. Experimentally, in a CMOS-compatible heterodyne interferometer, the sampling noise amplitude is suppressed by two orders of magnitude. It pushes the label-free single-nanoparticle detection limit down to the attogram level without exploiting cavity resonances, plasmonic effects, or surface charges on the analytes. Single polystyrene nanobeads and HIV-1 virus-like particles are detected as a proof-of-concept demonstration for airborne biosensing. Based on integrated waveguide arrays, our devices hold great potentials for multiplexed and rapid sensing of diverse viruses or molecules.

PVC arrhythmia classification based on fractional order system modeling.

It is well known that many physiological phenomena are modeled accurately and effectively using fractional operators and systems. This type of modeling is due mainly to the dynamical link between fractional-order systems and the fractal structures of the physiological systems. The automatic characterization of the premature ventricular contraction (PVC) is very important for early diagnosis of patients with different life-threatening cardiac diseases. In this paper, a classification scheme of normal and PVC beats of the electrocardiogram (ECG) signal is proposed. The clustering features used for normal and PVC beats discrimination are the parameters of the commensurate order linear fractional model of the frequency content of the QRS complex of the ECG signal. A series of tests and comparisons have been performed to evaluate and validate the efficiency of the proposed PVC classification algorithm using the MIT-BIH arrhythmia database. The proposed PVC classification method has achieved an overall accuracy of 94.745%, a specificity of 95.178% and a sensitivity of 90.021% using all the 48 records of the database.

In vivo diagnosis of skin cancer with a portable Raman spectroscopic device.

In this study, we performed in vivo diagnosis of skin cancer based on implementation of a portable low-cost spectroscopy setup combining analysis of Raman and autofluorescence spectra in the near-infrared region (800-915 nm). We studied 617 cases of skin neoplasms (615 patients, 70 melanomas, 122 basal cell carcinomas, 12 squamous cell carcinomas and 413 benign tumors) in vivo with a portable setup. The studies considered the patients examined by GPs in local clinics and directed to a specialized Oncology Dispensary with suspected skin cancer. Each sample was histologically examined after excisional biopsy. The spectra were classified with a projection on latent structures and discriminant analysis. To check the classification models stability, a 10-fold cross-validation was performed. We obtained ROC AUCs of 0.75 (0.71-0.79; 95% CI), 0.69 (0.63-0.76; 95% CI) and 0.81 (0.74-0.87; 95% CI) for classification of a) malignant and benign tumors, b) melanomas and pigmented tumors and c) melanomas and seborrhoeic keratosis, respectively. The positive and negative predictive values ranged from 20% to 52% and from 73% to 99%, respectively. The biopsy ratio varied from 0.92:1 to 4.08:1 (at sensitivity levels from 90% to 99%). The accuracy of automatic analysis with the proposed system is higher than the accuracy of GPs and trainees, and is comparable or less to the accuracy of trained dermatologists. The proposed approach may be combined with other optical techniques of skin lesion analysis, such as dermoscopy- and spectroscopy-based computer-assisted diagnosis systems to increase accuracy of neoplasms classification.

An open access dataset for developing automated detectors of Antarctic baleen whale sounds and performance evaluation of two commonly used detectors.

Since 2001, hundreds of thousands of hours of underwater acoustic recordings have been made throughout the Southern Ocean south of 60° S. Detailed analysis of the occurrence of marine mammal sounds in these circumpolar recordings could provide novel insights into their ecology, but manual inspection of the entirety of all recordings would be prohibitively time consuming and expensive. Automated signal processing methods have now developed to the point that they can be applied to these data in a cost-effective manner. However training and evaluating the efficacy of these automated signal processing methods still requires a representative annotated library of sounds to identify the true presence and absence of different sound types. This work presents such a library of annotated recordings for the purpose of training and evaluating automated detectors of Antarctic blue and fin whale calls. Creation of the library has focused on the annotation of a representative sample of recordings to ensure that automated algorithms can be developed and tested across a broad range of instruments, locations, environmental conditions, and years. To demonstrate the utility of the library, we characterise the performance of two automated detection algorithms that have been commonly used to detect stereotyped calls of blue and fin whales. The availability of this library will facilitate development of improved detectors for the acoustic presence of Southern Ocean blue and fin whales. It can also be expanded upon to facilitate standardization of subsequent analysis of spatiotemporal trends in call-density of these circumpolar species.

EEG differentiates left and right imagined Lower Limb movement.

BACKGROUND: Identifying which EEG signals distinguish left from right leg movements in imagined lower limb movement is crucial to building an effective and efficient brain-computer interface (BCI). Past findings on this issue have been mixed, partly due to the difficulty in collecting and isolating the relevant information. The purpose of this study was to contribute to this new and important literature. RESEARCH QUESTION: Can left versus right imagined stepping be differentiated using the alpha, beta, and gamma frequencies of EEG data at four electrodes (C1, C2, PO3, and PO4)? METHODS: An experiment was conducted with a sample of 16 healthy male participants. They imagined left and right lower limb movements across 60 trials at two time periods separated by one week. Participants were fitted with a 64-electrode headcap, lay supine on a specially designed device and then completed the imagined task while observing a customized computer-generated image of a human walking to signify the left and right steps, respectively. RESULTS: Findings showed that eight of the twelve frequency bands from 4 EEG electrodes were significant in differentiating imagined left from right lower limb movement. Using these data points, a neural network analysis resulted in an overall participant average test classification accuracy of left versus right movements at 63 %. SIGNIFICANCE: Our study provides support for using the alpha, beta and gamma frequency bands at the sensorimotor areas (C1 and C2 electrodes) and incorporating information from the parietal/occipital lobes (PO3 and PO4 electrodes) for focused, real-time EEG signal processing to assist in creating a BCI for those with lower limb compromised mobility.

A Programmable Platform for Accelerating the Development of Smart Ultrasound Transducer Probe.

During the COVID-19 pandemic, an ultraportable ultrasound smart probe has proven to be one of the few practical diagnostic and monitoring tools for doctors who are fully covered with personal protective equipment. The real-time, safety, ease of sanitization, and ultraportability features of an ultrasound smart probe make it extremely suitable for diagnosing COVID-19. In this article, we discuss the implementation of a smart probe designed according to the classic architecture of ultrasound scanners. The design balanced both performance and power consumption. This programmable platform for an ultrasound smart probe supports a 64-channel full digital beamformer. The platform's size is smaller than 10 cm ×5 cm. It achieves a 60-dBFS signal-to-noise ratio (SNR) and an average power consumption of ~4 W with 80% power efficiency. The platform is capable of achieving triplex B-mode, M-mode, color, pulsed-wave Doppler mode imaging in real time. The hardware design files are available for researchers and engineers for further study, improvement or rapid commercialization of ultrasound smart probes to fight COVID-19.

Methods for Adventitious Respiratory Sound Analyzing Applications Based on Smartphones: A Survey.

Detection and classification of adventitious acoustic lung sounds plays an important role in diagnosing, monitoring, controlling and, caring the patients with lung diseases. Such systems can be presented as different platforms like medical devices, standalone software or smartphone application. Ubiquity of smartphones and widespread use of the corresponding applications make such a device an attractive platform for hosting the detection and classification systems for adventitious lung sounds. In this paper, the smartphone-based systems for automatic detection and classification of the adventitious lung sounds are surveyed. Such adventitious sounds include cough, wheeze, crackle and, snore. Relevant sounds related to abnormal respiratory activities are considered as well. The methods are shortly described and the analyzing algorithms are explained. The analysis includes detection and/or classification of the sound events. A summary of the main surveyed methods together with the classification parameters and used features for the sake of comparison is given. Existing challenges, open issues and future trends will be discussed as well.

High-throughput and uniform large field-of-view multichannel fluorescence microscopy with super-thin dichroism for a dPCR gene chip.

With the rapid development of digital precision medicine, the digital polymerase chain reaction (dPCR) deoxyribonucleic acid (DNA) gene chip integrates more channels with smaller size and larger area, which leads to a higher technical requirement for commercial optical fluorescence microscopy. The multitime image splicing method is widely used for DNA detection. However, it consumes time and has visible seamless image results. This work has demonstrated the design and fabrication of a three channel reversed and reduced fluorescence microscopic imaging system with high-resolution and large field of view for one-time imaging. We introduced the super ultra-thin dichroic mirror into the space between the objective lens and the gene chip to achieve a uniform illumination and a strong signal for the large area gene chip. The fabricated new fluorescence microscopy can take a one-time imaging for the 28×18mm dPCR gene chip with more than 20,000 multi micro-droplets within FAM, HEX, and ROX fluorescence channels. The optical system was designed with a numerical aperture (NA) of 0.106. Modulation transfer function (MTF) is higher than 0.675 at 70 lp/mm, and the function resolution capability is 10 µm with the whole magnification of -0.65times. The fly's eye lens-based illumination system was tested with a uniform output of over 90% in the whole ϕ34.7mm chip area. The design was tested, and the experimental results showed that this new system provides a fast, efficient, and professional optical imaging method for detection of the new emerged digital PCR gene chip, which has larger area and more channels.